1 Arabidopsis Genome Initiative. Analysis of the genome sequence of the flowering plant Arabidopsis thaliana. Nature, 2000, 408: 796–815.2 International Rice Genome Project. The map-based sequence of the rice genome. Nature, 2005, 436: 793–800.3 Kawasaki S, Murakami Y, Imaizumi-Anraku H, Shimizu A, Mikami I. Construction of high-density map, genome library, and saturation mapping of nodulation genes. In: Nagata T, Tabata S. Biotechnology in Agriculture and Forestry. Vol. 52. Brassicas and Legumes. Berlin: Springer, 2003: 183–202.4 Vos P, Hogers R, Bleeker M, Reijans M, van de Lee T, Hornes M, Frijters A, Pot J, Peleman J, Kuiper M, Zabeau M. AFLP: A new techique for DNA fingerprinting. Nucl Acids Res, 1995, 23: 4407–4414.5 Weber J L, May P E. Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction. Am J Hum Genet, 1989, 44: 388–396.6 Murray M G, Thompson W F. Rapid isolation of high molecular weight plant DNA. Nucl Acids Res, 1980, 8: 4321– 4325.7 Chen X, Temnykh S, Xu Y, Cho Y G, McCouch S R. Development of a microsatellite framework map providing genome-wide coverage in rice (Oryza sativa L.). Theor Appl Genet, 1997, 95: 553–567.8 Davis B J. Disc electrophoresis: II. Method and application to human serum proteins. Ann N Y Acad Sci, 1964, 121: 404– 427.9 Lander E S, Green P, Abrahamson J, Barow A, Daly M J, Lincoln S E, Newbug L. MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1987, 1: 174–181.10 Nei M, Li W H. Mathemathical model for studying genetic variation in terms of restriction endonucleases. Proc Natl Acad Sci USA, 1979, 76: 5269–5273.11 Yap I V, Nelson R J. Winboot: A program for performing bootstrap analysis of binary data to determine the confidence limits of UPGMA-based dendrogram. In: IRRI Discussion Paper Series 14. Los Baños, Philippines: International Rice Research Institute, 1996. http://www.cgiar.org/irri/winboot.htm.12 Felsenstein J. PHYLIP – Phylogeny Inference Package (Version 3.2). Cladistics, 1989, 5: 164–166.13 Harushima Y, Yano M, Shomura A, Sato M, Shimano T, Kuboki Y, Yamamoto T, Lin S Y, Antonio B A, Parco A, Kajiya H, Huang N, Yamamoto K, Nagamura Y, Kurata N, Khush G S, Sasaki T. A high-density rice genetics linkage map with 2275 marker using a single F2 population. Genetics, 1998, 148: 479–494.14 Vuylsteke M, Mank R, Antonise R, Bastiaans E, Senior M L, Stuber C W, Melchinger A E, Lübberstedt T, Xia X C, Stam P, Zabeau M, Kuiper M. Two high-density AFLP® linkage maps of Zea mays L.: Analysis of distribution of AFLP markers. Theor Appl Genet, 1999, 99: 921–935.15 Haanstra J P W, Wye C, Verbakel H, Meijer-Dekens F, van den Berg P, Odinot P, van Heusden A W, Tanksley S, Lindhout P, Peleman J. An integrated high-density RFLP- AFLP map of tomato based on two Lycopersicon esculentum × L. Pennellii F2 populations. Theor Appl Genet, 1999, 99: 254–271.16 Hori K, Kobayashi T, Shimizu A, Sato K, Takeda K, Kawasaki S. Efficient construction of high-density linkage map and its application to QTL analysis in barley. Theor Appl Genet, 2003, 107: 806–813.17 Kikuchi S, Taketa S, Ichii M, Kawasaki S. Efficient fine mapping of the naked caryopsis gene (nud) by HEGS (high efficiency genome scanning)/AFLP in barley. Theor Appl Genet, 2003, 108: 73–78.18 Shimizu A, Yanagihara S, Kawasaki S, Ikehashi H. Phosphorus deficiency-induced root elongation and its QTL in rice (Oryza sativa L.). Theor Appl Genet, 2004, 109: 1361–1368.19 Shimizu A, Guerta C Q, Gregorio G B, Kawasaki S, Ikehashi H. QTLs for nutritional contents of rice seedlings (Oryza sativa L.) in solution cultures and its implication to tolerance to iron-toxicity. Plant & Soil, 2005, 275: 55–64.20 Sugita T, Kinoshita T, Kawano T, Yuji K, Yamaguchi K, Nagata R, Shimizu A, Chen L, Kawasaki S, Hasegawa H. Rapid construction of a linkage map using high-efficiency genome scanning/AFLP and RAPD, based on an intraspecific, doubled-haploid population of Capsicum annuum. Breeding Sci, 2005, 55: 287–295.21 Imaizumi-Anraku H, Takeda N, Charpentier M, Perry J, Miwa H, Umehara Y, Kouchi H, Murakami Y, Mulder L, Vickers K, Pike J, Downie J A, Wang T, Sato S, Asamizu E, Tabata S, Yoshikawa M, Murooka Y, Wu G J, Kawaguchi M, Kawasaki S, Parniske M, Hayashi M. Plastid proteins crucial for symbiotic fungal and bacterial entry into plant roots. Nature, 2005, 433: 527–531.22 Murakami Y, Miwa H, Imaizumi-Anraku H, Kouchi H, Downie J A, Kawaguchi M, Kawasaki S. Positional cloning identifies Lotus japonicus NSP2, a putative transcription factor of the GRAS family, required for NIN and ENOD40 gene expression in nodule initiation. DNA Res, 2006, 13: 255–265.23 Shimizu A, Kato K, Komatsu A, Motomura K, Ikehashi H. Genetic analysis of root elongation induced by phosphorus deficiency in rice (Oryza sativa L.): Fine QTL mapping and multivariate analysis of related traits. Theor Appl Genet, 2008, 117: 987–996. |